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Reference Assembly
GCA_900231805.1
Paired-End Sequencing Data
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Workflow
ChIP-seq Analysis: Paired-End Read Processing
Description
Complete ChIP-seq analysis for paired-end sequencing data. Processes raw FASTQ files through adapter removal (cutadapt), alignment to reference genome (Bowtie2), and stringent quality filtering (MAPQ >= 30, concordant pairs only). Peak calling with MACS2 optimized for paired-end reads identifies protein-DNA binding sites. Generates alignment files, peak calls, and quality metrics for downstream analysis.
Species
Trichomonas tenax
Strain
NIH4 ATCC 30207
Accession
GCA_900231805.1
Priority Pathogen
-
NIAID
NIH
HHS
USA.GOV
BRC Analytics is a part of the Bioinformatics Resource Centers for Infectious Diseases Program developed and funded by NIAID
BV-BRCPathogen Data Network
v0.14.0-b0b9a48