Configure Inputs
Reference Assembly
GCF_000526875.1GTF Files
Genes and Gene Predictions
No gene models found.Workflow
Single-Cell RNA-seq Preprocessing: 10X Genomics CellPlex Multiplexed Samples
Description
Comprehensive preprocessing for 10X Genomics CellPlex multiplexed single-cell RNA-seq data. Processes Cell Multiplexing Oligo (CMO) FASTQ files with CITE-seq-Count including required CellPlex-specific translation steps. Simultaneously processes gene expression FASTQ files with STARsolo and DropletUtils for alignment and cell filtering, and formats outputs for seamless import into Seurat/Scanpy (Read10X function).